Gene ABC1 (Bakers Yeast)
ABC1
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| ABC1.kin_dom | Protein Kinase Domain | Sugen global kinase HMM prediction | 269 | Kinase domain by global Sugen HMM | Fasta, JSON |
| ABC1.AA | Protein | Refseq_NP | 501 | `multicopy suppressor of a cytochrome b mRNA translation defect, essential for the electron transfer in the bc1 complex; Abc1p [Saccharomyces cerevisiae]` | Fasta, JSON |
Protein domains of ABC1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| Kinase | ABC1.AA | ABC1-A | 189-385 | 51 | 9.80000000001e-155 | 520.35 | In-house | 1-216 (216) | Show / Hide |
Range on Protein: 189-385 Range on HMM: 1-216/216 Sequence Identity: 51% (112 aa) FDKIPMAAASIGQVHAAELPSGQRVVVKIQYPGVKESIDSDLNSLLMLLTASSLLPKGLFLDKTIANARTELKWECDYNREARALQKFEALLKDDPAFEV | |.|.|||||||.|.|..|..|.||||||||.||||||.|.|.|....|...|||.|||..|..||.||.|||||.||||..|||..||||.|.|.| FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAESIDSDINNLMMVMNMSGMFPKGMFLDHFIDYARRELHWECDYQREARCMQKFRQLLKDWPFFYV PHVFPEYTTDNIITMTRMEGTEIMKLPKASQETKNFISENIMRLCLE---------------EIATFKYMQTDPNWANFLYNGR----TKKIELLDFGAS |||..||.||...||..|.|..|......|||..|.|..|||||||. ||.....||||||||||.|... ..|.|||||||| PHVIDEYCTDRVLTMELMYGFPIDQCQGLSQEIRNYICYNIMRLCLREVEYIFLSTFIIIDFEIFEWRFMQTDPNWANFFYDKHPKTGQHKVELLDFGAS RPFAEDFILKYRKLLT |....||...|..... REYGKDFTDHYMQIIK |
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| Kinase | ABC1.AA | ABC1 | 176-292 | 42 | 5.2e-65 | 222.28 | In-house | 1-123 (123) | Show / Hide |
Range on Protein: 176-292 Range on HMM: 1-123/123 Sequence Identity: 42% (53 aa) KELGANWKTKFSKFDKIPMAAASIGQVHAAELPSGQRVVVKIQYPGVKESIDSDLNSLLMLLTASSLLPKG-----LFLDKTIANARTELKWECDYNREA ..|| ||. || ||. |.|||||.|||.|.|..||.|.||.|.|||.|.|..|.| ..|..........| .||.... ....||.||||.|.|| QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEA RALQKFEALLK--DDPAFEVPHVF |...|...|.| ..|.|.||... RNAEKCRQLFKKFHWPFFYVPRIH |
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| Kinase | ABC1.AA | ABC1 | 176-292 | 34 | 1e-54 | 186.24 | Pfam | 1-126 (126) | Show / Hide |
Range on Protein: 176-292 Range on HMM: 1-126/126 Sequence Identity: 34% (44 aa) KELGANWKTKFSKFDKIPMAAASIGQVHAAELPS-GQRVVVKIQYPGVKESIDSDLNSLLMLLTASSLLPKG-----LFLDKTIANARTELKWECDYNRE .|||..|. .|. ||..|.|||||.||| |.|.. |. |.||.|.||||.....|.. . ..... ....| ..|..... .| .|.||.|| || EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE ARALQKFEALLKDD---PAFEVPHVF |.. .| ..... |.. ||.|. AKNMERFRENFRHWHRQPWVYVPKVY |
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| Kinase | ABC1.AA | ABC1-B | 176-231 | 44 | 6.8e-16 | 54.77 | In-house | 1-55 (125) | Show / Hide |
Range on Protein: 176-231 Range on HMM: 1-55/125 Sequence Identity: 44% (25 aa) KELGANWKTKFSKFDKIPMAAASIGQVHAAELPSGQRVVVKIQYPGVKESIDSDLN | || | || ||. | ||||. ||| | | |..| ||.|.| ...... |.. KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMM |
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