Gene TAF1 (Slime mold)

TAF1

Species: Slime mold
Alias: TFIID250, DdisK284, DDB0220687, TAF1, TFIID1
External Links: DictyBase Link ,
Annotation:

Classification

Group: Atypical
Family: TAF1

Sequence

Name Sequence Type Origin Length Description Download
TAF1.AA Protein None 2310 None Fasta, JSON
TAF1.kin_dom Protein Kinase Domain None 8 None Fasta, JSON

Protein domain

Protein domains of TAF1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
TBP-binding TAF1.AA TBP-binding 3-41 34 0.000314 16.89 Pfam 3-48 (77) Show / Hide 
Range on Protein: 3-41
Range on HMM: 3-48/77
Sequence Identity: 34% (16 aa)

KDKEKKG-----NLTGFLFGNVKESGELDVE-ENDQVF-KDLKKDL
 | .. .     |||||||||. |.| |. . . .| . ...|. |
DDNDNERNSRGFNLTGFLFGNIDEHGQLEDDDFREQGLDEECKEHL
DUF3591 TAF1.AA DUF3591 839-894 29 0.000335 15.97 Pfam 1-61 (494) Show / Hide 
Range on Protein: 839-894
Range on HMM: 1-61/494
Sequence Identity: 29% (20 aa)

FNL--SNDKFYRPVRKPPPRPPNGSTKV-------VIQHSLPGIKLSLV--KTHLTKEDLIYAHRPR
||.  |||..| . ..      |  .||        |.||.| ..|..   |..|.|...   |||.
FNIIFSNDEYYDMLKE------NHQNKVRQTIGNLNIEHSMPALRLQWPYYKVKLNKREARSFHRPH
DUF3591 TAF1.AA DUF3591 967-1342 35 8.10000000001e-106 362.64 Pfam 108-494 (494) Show / Hide 
Range on Protein: 967-1342
Range on HMM: 108-494/494
Sequence Identity: 35% (139 aa)

SDLSARD-GRLVLIEYTEQHPPLVSNVGMGLRIRNYYKKKNTHDTGPKDLN-FEDGELVMLDNNEESPF--LGDINPGQTIQSVVNNLFKVPIHKHNSAN
.||. .| . ..|.||.|..||. ||.||| .| |||.||.  ||.. .|  .  ||   |. . .|||  .| . ||....   ||.. .|| ||. ..
KDLTLGDNSPVILMEYCEEYPPVMSNFGMGSKIINYYRKKHMEDTHRPKLDDI--GETHVLHPQDKSPFWNFGHVHPGEIVPTLYNNMYRAPIFKHKPEP

TDFLLVKSRD----GKRWYIRDVGPIYAAGQILPEVEVPAPNSRNANMFLKSRLQAYIYRQFLKKSNPQRRLKITDICSAF-PSQSETSIRKRLKDCADF
||||...|..    | ..|.| .  ....||..| .|||.|.|| .... | ||.. .|| | .  .|..|..| ||  .| | |.| ..|.|||.....
TDFLCIRSTTPGGHGQKYYLRNIDHMFCVGQTFPVMEVPGPHSRKVTNMSKNRLKMIVYRLFWGQKSPRHRISIHDITKHFFPDQNEMQNRQRLKEFMKY

QRGG-DD-SGWWTVKDNFTLPTE-EEFQKLVTPEAVVSFESMLIGLQRLQDNGIIHFTAPGTIPTILGNLDDEDPIKKSIKPVEDELSITPWNLTGSFLS
|| | .| .|||  |...|||.| ||  |..||| . . |||  |.|.|.|.|.  .          ...|||.  ||   ....|.. .|||.|  |. 
QRDGGMDNQGWWKLKEGETLPDEFEEIRKMITPEDCCLYESMQVGQQHLEDAGYNNTDEFKRDYQQIQEDDDEE-TKKVQMKIDLEQMMAPWNTTRNFIN

AMQGKGRLQII-SDDPTGREDEYSYLKM-PQKVVNQKQKAIKLALQKNQVTGTDADLRKLSLSASKTVLLELGVDEETINKLARWQRIDL
|.|||  ||.    ||||... .|...  ..|   .||.  . .  | .|.||.|..|....   .  .   || || |... .||...|
ATQGKAMLQLHGEGDPTGCGEGFSFIRTKSMKGGFLKQGEGPQDKPKKAVAGTRAKERGGHSYNVAQQQRLYGVPEEEIRRIWYWQKRSL
Kinase TAF1.AA Bromodomain 2121-2205 26 1.4e-19 66.15 Pfam 1-89 (89) Show / Hide 
Range on Protein: 2121-2205
Range on HMM: 1-89/89
Sequence Identity: 26% (24 aa)

FERILD--KLRTNDEFIAFRHKV--TPKLAPDYHKVIKNPIDLTTMRDRNRHWEYK-SKNQFIDAIKLMVANCFEYNE-KRFSHLLPIAEK
...|.|  .. ....  .|.| |   ..  |||...||.|.||.|.. . .  .|. .  .|.  ..||  || .||. ..  .   .|.|
CDQIMDMKYIMEHPICEPFWHPVDPDRDEYPDYYDIIKHPMDLSTIQQKLKNNKYRNNIAEFWHDMELMWHNCMTYNGPDSPIYK--DARK
BROMO TAF1.AA BROMO 1579-2219 5 4.8e-15 57.24 SMART 1-118 (118) Show / Hide 
Range on Protein: 1579-2219
Range on HMM: 1-118/118
Sequence Identity: 5% (33 aa)

DEETKKQRRRIQERLRRLKKNDQREDSFNMNSSNSSIGATIGSSNMINISAGNIPVSNINNNNYNNNNNNNNFSLNTSSSNKPIPPHRSSSSGIGSSGSN
|.. .|.  .. . ....|... .                                                                            
DPK-QKKCQELLKEVMCHKHDHGDPM--------------------------------------------------------------------------

NNSNTDRDQTRISIVMPNQQANSDSNSSSSTKIRIGQSSSSSSSSSSSSGHPRSSDREHRSSEHRSGEHRSSEHRSSEHRGSEHRSSEHRSGEHSSHHRS
                                                                                                    
----------------------------------------------------------------------------------------------------

SEHRSGDREHRSSDRGDREHRSSEHRSSEHRSSEHRSSEHRSGDKEHRSDREHRSSEHRSGDREHRSDREHREHRSGDREHRSDREHREHRSERSRNSSS
                                                                                                    
----------------------------------------------------------------------------------------------------

GSSSSSRDHRDSHHRNSTGSSSDSHSSSHHSSSNRDSNHNGGSSSNNNNNNSNNNHNNNNNSNNNNNNNNNNNNNNNINNNNNNNNNINNINNNNNNNIN
                                                                                                    
----------------------------------------------------------------------------------------------------

NINNNYNNNNNNNNNNNNNNNNNNNNNNINNNENNNTNNLSNSTNQSPTLSQSGIIIRYNGSNSGNSNNTNGGNNRTEDQSVLNTPLSASSSGSNRKKRT
                                                                                                    
----------------------------------------------------------------------------------------------------

LDQSNSESPSLSSTTLDGSDKSSRRNRVRKDGSGADVELSNIFERILDKLRTNDEFIAFRHKVTPKL--APDYHKVIKNPIDLTTMRDRNRHWEYKSKNQ
                                                  | .. .  |...|..|.  .|||...||||.|| |.. . . ..|.|  .
-------------------------------------------------NRGRPYAWPFMQPVDRKELNYPDYYDIIKNPMDLKTIKKKLENHQYQSMEE

FIDAIKLMVANCFEYNEKRFSHLLPIAEKLLTSTLQLLAPFDS
|.| ..||. ||. ||| . |.    |.||   ...... |  
FVDDFMLMFNNCMTYNE-PDSEVYKMAKKLQKFFEEKWREFPP
Kinase TAF1.AA Dicty3 1654-1972 12 6.5e-14 42.14 In-house 300-385 (351) Show / Hide 
Range on Protein: 1654-1972
Range on HMM: 300-385/351
Sequence Identity: 12% (44 aa)

NTSSSNKPIPPHRSSSSGIGSSGSNNNSNTDRDQTRISIVMPNQQANSDSNSSSSTKIRIGQSSSSSSSSSSSSGHPRSSDREHRSSEHRSGEHRSSEHR
|                                                                                                   
N---------------------------------------------------------------------------------------------------

SSEHRGSEHRSSEHRSGEHSSHHRSSEHRSGDREHRSSDRGDREHRSSEHRSSEHRSSEHRSSEHRSGDKEHRSDREHRSSEHRSGDREHRSDREHREHR
                                                                                                    
----------------------------------------------------------------------------------------------------

SGDREHRSDREHREHRSERSRNSSSGSSSSSRDHRDSHHRNSTGSSSDSHSSSHHSSSNRDSNHNG------------------------GSSS------
                                                                |                         | |.      
----------------------------------------------------------------NNKMSSTCRDIQCYYSNEINWKLIDFGLSKNISYYS

NNNNNNSNNNHNNNNNSNNNNNNNNNNNNNNNINNNNNNNNNINNINNN
|||||| .|| ||||| ||||||||||||||| |||||.||| ..||||
NNNNNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNVKIINNN
Kinase TAF1.AA Dicty3 1973-2101 30 0.004459 5.78 In-house 193-251 (351) Show / Hide 
Range on Protein: 1973-2101
Range on HMM: 193-251/351
Sequence Identity: 30% (39 aa)

NNNNINNINNNYNNNNNNNNNNNNNNNNNNNNNNINNNENNNTNNLSNSTNQSPTLSQSGIIIRYNGSNSGNSNNTNGGNNRTEDQSVLNTPLSASSSGS
|||| || ||| |||||||||||||||||||||| ||| ||| ..  |                                                    
NNNNNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNVKIINNN---------------------------------------------------

NRKKRTLDQSNSESPSLSSTTLDGSDKSS
                   . .  ..|..
-------------------IYSNKQYKQK