Gene 13478 (Tetrahymena)

13478

Species: Tetrahymena
Alias: 38.m00313, PreTt13478, 1139, 13478, TTHERM_00368570
External Links: Tetrahymena Genome Database (TGD)
Annotation:

Classification

Group: Other
Family: Ciliate-E1

Sequence

Name Sequence Type Origin Length Description Download
13478.AA Protein None 1194 None Fasta, JSON
13478.kin_dom Protein Kinase Domain None 86 None Fasta, JSON
13478.NA RNA None 3585 None Fasta, JSON

Protein domain

Protein domains of 13478.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase 13478.AA Ciliate-A8 33-194 40 2.4e-44 150.81 In-house 1-151 (151) Show / Hide 
Range on Protein: 33-194
Range on HMM: 1-151/151
Sequence Identity: 40% (68 aa)

YVYEREISKGHFNIVVQAKSANNHNCKVAIQILNY-EYNSKINVEKLNKQLDFQDSLSEEKYILKFIQLIQDQKYGFTAIITEYCEG--FYSNDQQYHQK
|.|.. . || | .||||.|  ||.|.||| |..| .   ||| ....|.      .  |||||..|. ||| ..||.||.||.|.   ||         
YKYQKVLEKGDFSYVVQAYSI-NHQCQVAIKIIKYMNQQNKINDKEFEKCIQAMQKIKNEKYILQIIECIQDKEQGFIAIVTEFCDCFDFYK--------

LKFSNIKYKATLAQVLE--QNNLTITQVYALAYQLIKGLILLQEKEKVFKYIEPNKIFYSISKNQFL
        | .||..||   |..|. |..||.|||.|.|...|||  . . | |. |.|| |||||.
-------KKENLASILENNLNKFTFEQIVALTYQLLKCLLVFQEKGIIHCDIKPQNILYSWSKNQFI
Kinase 13478.AA Ciliate-E1 39-229 23 5.3e-23 71.95 In-house 1-182 (202) Show / Hide 
Range on Protein: 39-229
Range on HMM: 1-182/202
Sequence Identity: 23% (45 aa)

ISKGHFNIVVQAKSANNHNCKVAIQILNYEYN-SKINVEKLNKQLD-FQDSLSEEKYILKFIQLIQDQKYGFTAIITEYCEGFYSNDQQYHQKLKFSNIK
|..|.| ||..||. ||....||..| |...| .... ....|. . ... . .|.||...|. |..... ...||.|.|.  . . .|.|      | .
IGNGSFSIVFKAKQQNNNYNQVAQKIINCCFNYNQNHFQDEIKEYYKIMK-FKKECYIIQIIDYIKIDQNYICIIIFECCCCSLKDYLQNH------N-R

YKATLAQVLEQNNLTITQVYALAYQLIKGLILLQEKEKVFKYIEPNKIFYSISKNQFLLTSISTSQVIDSQYDYDDDEDQQLGNLNYQSPEVI
 .    .  .||..|..|. ....|||.||| |. .   .  | | .| .. . ...... ...|... .. ... ......   .|..||..
LEYWQQCQQNQNQFTFQQKMQIIFQLIDGLIELHQYNIIHRDIKPQNILINNQ-GNYVYCDFGISKFLKNNQNQQCQYKGYT--HYYYPPEQY
Kinase 13478.AA S_TKc 33-302 12 2.6e-05 -99.08 SMART 1-231 (231) Show / Hide 
Range on Protein: 33-302
Range on HMM: 1-231/231
Sequence Identity: 12% (39 aa)

YVYEREISKGHFNIVVQAKSANNHNCKVAIQILNYEYNSKINVEKLNKQLDFQDSLSEEKYILKFIQLIQDQKYGFTAIITEYCEGFYSNDQQYHQKLKF
|   |.| || |  | ...  .  . .||| |..         |.. . ..   .    ..| |..  .||   ..  ...|||.|              
YEILRKIGKGAFGKVYKCRHKK-TGRIVAIKIIK---------EHIRREIQILKK--HHPNIVKLYDVFQD---DHLYMVMEYCDGDL------------

SNIKYKATLAQVLEQNN-------LTITQVYALAYQLIKGLILLQEKEKVF-----------------------KYIEPNKIFYSISKNQFLLTSISTSQ
       .| .......       ..  ..  ..||....|  . .. ..                        . .                       
------GDLFDYIKKRGRHGLRFPFPE-HARFYMYQICCALEYCHSH-GIIHRDLKPENILLDEHIKICDFGLARQL-----------------------

VIDSQYDYDDDEDQQLGNLNYQSPEVIDKSV----------ILLEALLQRKLKGMEYLKLKTQNLVSVFPDLPNQYNDEFVTKILSKMVEPTLSKRSYPL
            . . | ..| .|||.  .           || | |  . .   .. ..  . .            .|.   ...|. .   .||    
------------TTFCGTPWYMAPEVLGYGKCKCDWWSCGCILYEMLCGYPPFP-QMQMMFKKIG-----------SPEAKD-FIRKCLQKDPEKRPTA-

SLLQ-----ELNKFK
 .||      .  . 
EALQDEWDIKCHPWF
Kinase 13478.AA Dicty3-Unclassified 33-67 37 6e-05 12.53 In-house 1-35 (252) Show / Hide 
Range on Protein: 33-67
Range on HMM: 1-35/252
Sequence Identity: 37% (13 aa)

YVYEREISKGHFNIVVQAKSANNHNCKVAIQILNY
.| || .||| |  .  |.  |  |  ..|.| .|
WVIERQLSKGSFSQIYKAHKKNDPNFICNIKIIQY