Gene n120 (Tetrahymena)

n120

Species: Tetrahymena
Alias: 120, 3830.m00546, n120
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-Unique

Sequence

Name Sequence Type Origin Length Description Download
n120.AA Protein None 1100 None Fasta, JSON
n120.NA RNA None 3303 None Fasta, JSON

Protein domain

Protein domains of n120.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

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Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
HATPase_c n120.AA HATPase_c 609-700 22 4.1e-09 33.95 Pfam 1-79 (120) Show / Hide 
Range on Protein: 609-700
Range on HMM: 1-79/120
Sequence Identity: 22% (21 aa)

NDPYHLVRTLTNIIENSYSNTQT-GFVQILLHQSRIFKDHLRFDIIDSGKGIDPQILQLINESNFFNDEEEEDAINRLFLLFSSLST--NSDKVE
.|| .|.. ..|...|.   |.. | . . .|.     ||.|. ..|.|.||.|...              .. |.|.|  | . .   . .|..
GDPDRLHQVVWNLVDNAIKHTPEGGHITVRVHRDD---DHVRITVEDNGPGIPPEMH------------SIAEDIPRIFEPFYRTDPDSR-RKYG
Kinase n120.AA HisK 716-754 28 1.3e-07 24.14 In-house 120-164 (164) Show / Hide 
Range on Protein: 716-754
Range on HMM: 120-164/164
Sequence Identity: 28% (13 aa)

GFGLKFSHHMIKIIGPY------NRMFAESIPGIGSRISFIVYKE
|.||  . . .|..||.      .    .| .|.||  || .|. 
GLGLTICNNLAKGLGPEHNQNGNRGIQVQSEVGKGSTFSFYIYNN
HATPase_c n120.AA HATPase_c 609-755 17 0.000129 16.53 SMART 1-130 (130) Show / Hide 
Range on Protein: 609-755
Range on HMM: 1-130/130
Sequence Identity: 17% (28 aa)

NDPYHLVRTLTNIIENSYSNTQT--------------GFVQILLHQSRIFKDHLRFDIIDSGKGIDPQILQLINESNFFNDEEEEDAINRLFLLFSSLST
.|| .| . |.|...|.   |..              | . . .|         |. ..|.|.||.| ..             . . |.|.|  | . . 
GDPDRLRQVLWNLLDNAIKHTPEGHADPDLHDGKPGGGRITVRVH---------RITVEDNGPGIPPEMH-K----------SI-EDIPRIFEPFYRTDD

NSDKVEEKEQEKSIFQDYII--KGFGLKFSHHMIKIIGPYNRMFAESIPGIGSRISFIVYKEG
..        ..|  ..|     | ||  ..  ..  |    . .|      ....| . .| 
SPS----RMCPDSRSRKYGGGLTGLGLSICKRIVEQHGGT--IWVE------TTFTFTLPLER
Kinase n120.AA HisK 645-665 19 0.001487 9.46 In-house 67-87 (164) Show / Hide 
Range on Protein: 645-665
Range on HMM: 67-87/164
Sequence Identity: 19% (4 aa)

KDHLRFDIIDSGKGIDPQILQ
|........|.| |.......
KNLIQISVQDTGCGMPEEQQK