Gene n566 (Tetrahymena)

n566

Species: Tetrahymena
Alias: n566, 566, 3696.m00002
External Links:
Annotation:

Classification

Group: Atypical
Family: HisK

Sequence

Name Sequence Type Origin Length Description Download
n566.AA Protein None 1468 None Fasta, JSON
n566.NA RNA None 4407 None Fasta, JSON

Protein domain

Protein domains of n566.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n566.AA HisK 741-803 21 4.4e-12 40.2 In-house 1-94 (164) Show / Hide 
Range on Protein: 741-803
Range on HMM: 1-94/164
Sequence Identity: 21% (20 aa)

SDKLRLQQLIVNMLASSIKHT------LVGKVQIQIDYIPLQ-------------------------QMYKISIQDTGIGIDSHACQKISQIMN
||. |..| ..|..  ..| |        |.. |....|  |                         . ..||.||||.|.. .  .|| .. .
SDPNRIKQILINLISNALKFTQKGGIPFQGYIKIKVEQINTQNNIKYNSIFIQKIQENMVQEQLQQKNLIQISVQDTGCGMPEEQQKKIFKMFG
Kinase n566.AA HATPase_c 741-798 24 6.2e-08 29.84 Pfam 1-63 (120) Show / Hide 
Range on Protein: 741-798
Range on HMM: 1-63/120
Sequence Identity: 24% (16 aa)

SDKLRLQQLIVNMLASSIKHTLV-GKVQIQIDYIPLQQMYKISIQDTGIGIDS------HACQKI
 | .||.|.. | .  .||||   |.. . ..  .      |...|.|.||.       .  ..|
GDPDRLHQVVWNLVDNAIKHTPEGGHITVRVHRDD--DHVRITVEDNGPGIPPEMHSIAEDIPRI
Kinase n566.AA HisK 867-896 33 5.7e-07 21.79 In-house 129-164 (164) Show / Hide 
Range on Protein: 867-896
Range on HMM: 129-164/164
Sequence Identity: 33% (12 aa)

IAKKLG------SNNSIQLNSKKGIGTQLVFYVQDQ
.||.||       |..||. |..|.|.   ||....
LAKGLGPEHNQNGNRGIQVQSEVGKGSTFSFYIYNN
Kinase n566.AA HATPase_c 741-897 13 0.000689 7.82 SMART 1-130 (130) Show / Hide 
Range on Protein: 741-897
Range on HMM: 1-130/130
Sequence Identity: 13% (25 aa)

SDKLRLQQLIVNMLASSIKHTLV--------------GKVQIQIDYIPLQQMYKISIQDTGIGIDSHACQKISQIMNLNPDELSEYENIFSNNFSFIKDH
 |  ||.|.. | |  .||||                |.. . ..         |...|.|.||.     |                             
GDPDRLRQVLWNLLDNAIKHTPEGHADPDLHDGKPGGGRITVRVH--------RITVEDNGPGIPPEMH-K-----------------------------

HNIDDKTDFSNAFSPYTKQQK--------TSSKEESS--LKYIKFLMLNFIAKKLGSNNSIQLNSKKGIGTQLVFYVQDQS
    .  | .. | |. .  .         .| . .     .   .. ... .  |.   |...      |  .|..  . 
---SI-EDIPRIFEPFYRTDDSPSRMCPDSRSRKYGGGLTGLGLSICKRIVEQHGGT---IWVE------TTFTFTLPLER