Gene n1213 (Tetrahymena)

n1213

Species: Tetrahymena
Alias: 1213, 245.m00040, n1213
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-D1

Sequence

Name Sequence Type Origin Length Description Download
n1213.AA Protein None 463 None Fasta, JSON
n1213.NA RNA None 1392 None Fasta, JSON
n1213.kin_dom Protein Kinase Domain None 43 None Fasta, JSON

Protein domain

Protein domains of n1213.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n1213.AA Ciliate-E1 4-47 16 0.276488 0.52 In-house 153-202 (202) Show / Hide 
Range on Protein: 4-47
Range on HMM: 153-202/202
Sequence Identity: 16% (8 aa)

LQITQELIQKEKSYQFVTEESFKPSYPIKRN------NQSQESSQKTSIF
..| . |. ...... .. .  . ..| . |      |..|. ..|. |.
FGISKFLKNNQNQQCQYKGYTHYYYPPEQYNCPEQEHNKNQKINYKSDIY
Kinase n1213.AA Ciliate-C6 308-359 35 2.1e-08 25.9 In-house 143-195 (306) Show / Hide 
Range on Protein: 308-359
Range on HMM: 143-195/306
Sequence Identity: 35% (19 aa)

QLLQKLNQMHKTCKIAHSDIKPQNIVIGYD-LHFYFIDFGASVFLDREQSYQE
|. . | ...  |.||| ||||.|| |  |   .|  |||..  |. .. ...
QIGKTLADIYNECNIAHRDIKPSNILIMDDENNYYLSDFGCAQQLFQSEFTRN
Kinase n1213.AA Ciliate-A1 322-355 44 3.1e-08 24.06 In-house 122-155 (301) Show / Hide 
Range on Protein: 322-355
Range on HMM: 122-155/301
Sequence Identity: 44% (15 aa)

IAHSDIKPQNIVIGYDLHFYFIDFGASVFLDREQ
| |.|.|||||.|. |  . ..|.| |  |   |
ILHRDLKPQNILIHFDDKWKICDLGMSKQLEQNQ
Kinase n1213.AA Ciliate-E9 306-349 36 8.2e-08 20.65 In-house 117-160 (298) Show / Hide 
Range on Protein: 306-349
Range on HMM: 117-160/298
Sequence Identity: 36% (16 aa)

FCQLLQKLNQMHKTCKIAHSDIKPQNIVIGYDLHFYFIDFGASV
| ||.   . ||.   | | |.|| |..|   .    .||| |.
FKQLIDSIEYMHQYQNICHRDLKPENMLIDKNYNMKICDFGMSA
Kinase n1213.AA Ciliate-E1 195-388 21 8.5e-08 21.95 In-house 2-202 (202) Show / Hide 
Range on Protein: 195-388
Range on HMM: 2-202/202
Sequence Identity: 21% (44 aa)

KVGTYCVSIKTNISNDGKKLVILKSYEKDQQMSSDEFKNELQIEIDILNYIQQQNTQVTLPFIKYEFLKEQNLN-EKCILYIDSGLKSLD----LVYKQY
. | . . .|  . |. .. |..|  .  .......| .|.. .. |.. ....  ..   .|.| .... ..  ... .. .| .. |.    |  .. 
GNGSFSIVFKAKQQNNNYNQVAQKIINCCFNYNQNHFQDEIKEYYKIMK-FKKECYIIQ--IIDYIKIDQNYICIIIFECCCCSLKDYLQNHNRL-EYWQ

QINKNYECYNLI-LEFGFCQLLQKLNQMHKTCKIAHSDIKPQNIVIGYDLHFYFIDFGASVFLDREQSYQEYLQSYTRIYN-LQIYLD-----KRNKKEW
|...|.  ..   ..  ..||.. |...|  ..| |.|||||||.|  .  . . ||| | ||  .| .|     ||  |   . | .     ..|.|  
QCQQNQNQFTFQQKMQIIFQLIDGLIELHQ-YNIIHRDIKPQNILINNQGNYVYCDFGISKFLKNNQNQQCQYKGYTHYYYPPEQYNCPEQEHNKNQKIN

KQSEVI
..|...
YKSDIY
Kinase n1213.AA Ciliate-E8 322-348 41 1e-07 20.18 In-house 110-138 (138) Show / Hide 
Range on Protein: 322-348
Range on HMM: 110-138/138
Sequence Identity: 41% (12 aa)

IAHSDIKPQNIVIGY--DLHFYFIDFGAS
|.|.|.|  ||..    |.    |||| |
IIHCDFKLNNILVQRNDDTKIKIIDFGFS
Kinase n1213.AA Ciliate-E2b 304-356 24 3.9e-07 17.9 In-house 106-157 (272) Show / Hide 
Range on Protein: 304-356
Range on HMM: 106-157/272
Sequence Identity: 24% (13 aa)

FGFCQLLQKLNQMHKTCKIAHSDIKPQNIVIGYDLHFYFIDFGASVFLDREQS
| . ...  |   | . .| . |||| || . .. . . ||.|.. ... ...
FYIASICLCLEYLH-NQNIIYRDIKPENIMVDHKGYMKLIDMGTAKHMYKKNE
Kinase n1213.AA Ciliate-E5 308-356 40 3e-06 16.28 In-house 111-163 (271) Show / Hide 
Range on Protein: 308-356
Range on HMM: 111-163/271
Sequence Identity: 40% (22 aa)

QLLQKLNQMHKTCKIAHSDIKPQNIVIGYDLHFYFIDFGAS-----VFLDREQS
|| . |.. |    | | |||| ||. |||.   .||.| |     |  |   |
QLVKGLQDIHQKN-IIHLDIKPANILLGYDNKWKYIDMGISRKFKHVVRDKQVS
Kinase n1213.AA PDK1 321-358 39 6e-06 13.54 In-house 130-170 (307) Show / Hide 
Range on Protein: 321-358
Range on HMM: 130-170/307
Sequence Identity: 39% (16 aa)

KIAHSDIKPQNIVIGYDLHFYFIDFGAS---VFLDREQSYQ
.|.| |.|| || .. | |   .|||..    .|. .|| |
GIIHRDLKPENILLDKDMHIMITDFGTAGFDKILPEYQSQQ
Kinase n1213.AA Pkinase 316-360 28 8e-06 21.72 Pfam 124-168 (293) Show / Hide 
Range on Protein: 316-360
Range on HMM: 124-168/293
Sequence Identity: 28% (14 aa)

MHKTCKIAHSDIKPQNIVIGYDLHF----YFIDFGASVFLDREQSYQEY
.|. ..| | |.||.|| |  . |       .||| . ..| . ... .
CHS-MGIIHRDLKPENILIDNNGHIDACVKICDFGLAKQFD-Y-NNS-M
Kinase n1213.AA SRPK 308-332 48 1e-05 9.13 In-house 137-161 (554) Show / Hide 
Range on Protein: 308-332
Range on HMM: 137-161/554
Sequence Identity: 48% (12 aa)

QLLQKLNQMHKTCKIAHSDIKPQNI
|.|. |  .|  |.| | |||| |.
QVLIGLDYLHRKCGIIHTDIKPENV
Kinase n1213.AA Ciliate-B2 322-348 48 1.5e-05 8.88 In-house 125-151 (197) Show / Hide 
Range on Protein: 322-348
Range on HMM: 125-151/197
Sequence Identity: 48% (13 aa)

IAHSDIKPQNIVIGYDLHFYFIDFGAS
| | ||||||| . .   . . ||| |
ILHLDIKPQNILFMQNGNYVYCDFGIS