Gene n1214 (Tetrahymena)

n1214

Species: Tetrahymena
Alias: n1214, 1214, 1770.m00002
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-C8
Subfamily: C8

Sequence

Name Sequence Type Origin Length Description Download
n1214.AA Protein None 213 None Fasta, JSON
n1214.NA RNA None 1293 None Fasta, JSON
n1214.kin_dom Protein Kinase Domain None 36 None Fasta, JSON

Protein domain

Protein domains of n1214.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n1214.AA C8 2-36 57 2.9e-18 60.09 In-house 192-226 (226) Show / Hide 
Range on Protein: 2-36
Range on HMM: 192-226/226
Sequence Identity: 57% (20 aa)

VGNWAYMAPEILTKNDDQNKIYSKKSDSYSVGLLL
.|.|||.||||..|.|.|.|.|...||..||||.|
CGTWAYFAPEIEKKQDNQYKQYRIQSDLFSVGLVL
Kinase n1214.AA Ciliate-C8 2-36 61 5.3e-17 57.7 In-house 203-238 (238) Show / Hide 
Range on Protein: 2-36
Range on HMM: 203-238/238
Sequence Identity: 61% (22 aa)

VGNWAYMAPEILTK-NDDQNKIYSKKSDSYSVGLLL
.|||.|.|||...| ...|..|.|||||||||||.|
CGNWGYFAPEVEKKQSRIQSDIFSKKSDSYSVGLVL
Kinase n1214.AA STE-Unique 1-36 30 8.4e-08 23.18 In-house 508-543 (616) Show / Hide 
Range on Protein: 1-36
Range on HMM: 508-543/616
Sequence Identity: 30% (11 aa)

MVGNWAYMAPEILTKNDDQNKIYSKKSDSYSVGLLL
..|.  ||.||......  |. |. |.|..| | ..
CCGTPCYMCPEVINCRNQINNPYDTKVDIWSLGCMC
Kinase n1214.AA TKL 2-36 30 1.8e-07 22.97 In-house 234-279 (364) Show / Hide 
Range on Protein: 2-36
Range on HMM: 234-279/364
Sequence Identity: 30% (14 aa)

VGNWAYMAPEILTKNDDQNK-----------IYSKKSDSYSVGLLL
.|. ..||||.| .... ..            ||.|.| || |..|
CGTPRWMAPEVLRGQMNYTEKVGIDEFCKGFEYSEKCDVYSFGIVL
Kinase n1214.AA Ciliate-E2b 1-36 41 1.3e-05 13.2 In-house 165-200 (272) Show / Hide 
Range on Protein: 1-36
Range on HMM: 165-200/272
Sequence Identity: 41% (15 aa)

MVGNWAYMAPEILTKNDDQNKIYSKKSDSYSVGLLL
..|   ||||||..     .| |. |.| .|||  |
IIGTPHYMAPEIIQSLQPGGKGYTYKVDIWSVGICL
Kinase n1214.AA MSK 7-36 40 1.5e-05 14.74 In-house 171-200 (277) Show / Hide 
Range on Protein: 7-36
Range on HMM: 171-200/277
Sequence Identity: 40% (12 aa)

YMAPEILTKNDDQNKIYSKKSDSYSVGLLL
|||||.|.. . |.  |..  | .|.| .|
YMAPEMLRRGYAQDGGYDEACDWWSLGVIL
Kinase n1214.AA Ciliate-E2 7-36 44 2.6e-05 14.18 In-house 253-286 (365) Show / Hide 
Range on Protein: 7-36
Range on HMM: 253-286/365
Sequence Identity: 44% (15 aa)

YMAPEILTKNDDQN----KIYSKKSDSYSVGLLL
||||||| . ...|    | |..|.| .|.| .|
YMAPEILNGKKYDNQQKQKGYDYKCDIWSLGVIL
Kinase n1214.AA LRRK 1-36 43 3.3e-05 14.36 In-house 239-272 (351) Show / Hide 
Range on Protein: 1-36
Range on HMM: 239-272/351
Sequence Identity: 43% (16 aa)

MVGNWAYMAPEILTKN-DDQNKIYSKKSDSYSVGLLL
.|||. .|||||. .| .   . |. |.| || |..|
CVGNPGWMAPEIMRYNGE---EEYTEKVDCYSFGMIL
Kinase n1214.AA STE 1-36 35 0.000131 12.34 In-house 223-258 (359) Show / Hide 
Range on Protein: 1-36
Range on HMM: 223-258/359
Sequence Identity: 35% (13 aa)

MVGNWAYMAPEILTKNDDQ-NKIYSKKSDSYSVGLLL
.||   .||||....|.   .| |. |.| .|.|...
FVGTP-WMAPEVIQQNGQGRDKGYDTKCDIWSLGCTI
Kinase n1214.AA ULK 7-36 40 0.000335 10.88 In-house 213-242 (324) Show / Hide 
Range on Protein: 7-36
Range on HMM: 213-242/324
Sequence Identity: 40% (12 aa)

YMAPEILTKNDDQNKIYSKKSDSYSVGLLL
||||.|| ..  | . |..|.| .|.| ..
YMAPQILQGQGEQKPYYDYKCDIWSLGCIF