n1210

Species: Tetrahymena
Alias: 1210, n1210, 3707.m00071
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-E5

Sequence

Name Sequence Type Origin Length Description Download
n1210.AA Protein None 295 None Fasta, JSON
n1210.NA RNA None 885 None Fasta, JSON

Protein domain

Protein domains of n1210.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n1210.AA Ciliate-E5 1-53 19 4.5e-07 18.84 In-house 134-257 (271) Show / Hide
Range on Protein: 1-53
Range on HMM: 134-257/271
Sequence Identity: 19% (24 aa)

ILLSLDLKWVYANLAVS---------KVVSIF---------------------------------------------IKHIGFTALYSSPKYYLLMT---
|||..|.|| |. . .|         |.||                                               .. .|||..||||  | ...   
ILLGYDNKWKYIDMGISRKFKHVVRDKQVSEQRQNSSETIEENMIKFIKIIPYFFQREYPKLHNKNRKKLRYQIPHTCNLKGFTQCYSSPEQYQCYHNQM

--------------TSFTHKVTKS
              .||..|.||.
FYILIRNLPDIKYIQSFKKKITKQ

Kinase n1210.AA Ciliate-A1 72-103 46 3.7e-07 20.35 In-house 271-301 (301) Show / Hide
Range on Protein: 72-103
Range on HMM: 271-301/301
Sequence Identity: 46% (15 aa)

EEFNNYIIKKMMQYEANDRLQIEEVIDILKRL
|| .| .|.|||||| | |.. ...|| |. .
EELQN-LIFKMMQYEPNNRCSLQQCIDCLYIF

Kinase n1210.AA NAK 78-100 26 0.000852 8.46 In-house 277-299 (299) Show / Hide
Range on Protein: 78-100
Range on HMM: 277-299/299
Sequence Identity: 26% (6 aa)

IIKKMMQYEANDRLQIEEVIDIL
.|..|.. ... |. |..|. .|
LIRYMLTPDPEQRPNIYQVLNQL