Gene n1182 (Tetrahymena)

n1182

Species: Tetrahymena
Alias: 1182, 155.n00100, n1182
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-A8

Sequence

Name Sequence Type Origin Length Description Download
n1182.AA Protein None 480 None Fasta, JSON
n1182.NA RNA None 1443 None Fasta, JSON

Protein domain

Protein domains of n1182.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n1182.AA Ciliate-A8 29-122 45 4.5e-24 80.35 In-house 1-95 (151) Show / Hide 
Range on Protein: 29-122
Range on HMM: 1-95/151
Sequence Identity: 45% (43 aa)

YNFIKVLKKGNLSILTAAFSQKLRCQVAIKIYLKQDDQDSQNLQAFEKQIYKLQQINCEKFVLSIIEMIQDEERGLIGIVMELCDS-QLPKNLNN
| . ||| ||  |.   | |... |||||||   .. |. .| . |||.|  .| |. || .|.||| |||.| |.|.||.|.||.  . |.. |
YKYQKVLEKGDFSYVVQAYSINHQCQVAIKIIKYMNQQNKINDKEFEKCIQAMQKIKNEKYILQIIECIQDKEQGFIAIVTEFCDCFDFYKKKEN
Kinase n1182.AA Ciliate-E1 35-121 26 1.8e-10 30.72 In-house 1-88 (202) Show / Hide 
Range on Protein: 35-121
Range on HMM: 1-88/202
Sequence Identity: 26% (23 aa)

LKKGNLSILTAAFSQKLR-CQVAIKIYLKQDDQDSQNLQAFEKQIYKLQQINCEKFVLSIIEMIQDEERGLIGIVMELCDSQLPKNLN
...|  ||   |..|.   .|||.|| . .. ......|   |..||..... |. .. ||..|....  .. |..|.|. .| ..|.
IGNGSFSIVFKAKQQNNNYNQVAQKIINCCFNYNQNHFQDEIKEYYKIMKFKKECYIIQIIDYIKIDQNYICIIIFECCCCSLKDYLQ
Kinase n1182.AA Ciliate-E3 29-112 26 2e-06 16.74 In-house 1-86 (202) Show / Hide 
Range on Protein: 29-112
Range on HMM: 1-86/202
Sequence Identity: 26% (23 aa)

YNFIKVLKKGNLSILTAAFSQKLRCQVAIKIYLKQDDQD---SQNLQAFEKQIYKLQQINCEKFVLSIIEMIQDEERGLIGIVMELC
|   . | .|  ..   ||.. .  .||||  . |..|.   . ..|   ...   ||||  ..|. . . . |..  .| ||.|.|
YTVQQILGCGQFGRVYKAFDFQNNQDVAIKAIICQNQQNEGVGEQFQKTQQEFQNCQQIN-SQNVVKCHDQYYDQQNKMIFIVQEYC
Kinase n1182.AA S_TKc 29-198 13 0.000131 -109.3 SMART 1-231 (231) Show / Hide 
Range on Protein: 29-198
Range on HMM: 1-231/231
Sequence Identity: 13% (34 aa)

YNFIKVLKKGNLSILTAAFSQKLRCQVAIKIYLKQDDQDSQNLQAFEKQIYKLQQINCEKFVLSIIEMIQDEERGLIGIVMELCDS---QLPKNLNNTSS
| ..... ||  .    .   |   .|||||            . ... |  |..    ...  .....||   . . .|||.||     | . . .  .
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK----------EHIRREIQILKK--HHPNIVKLYDVFQD---DHLYMVMEYCDGDLGDLFDYIKKRGR

------------------------------------------------------------------------GEDV-SNEVYSIGVLLIEAFLQRAVTEK
                                                                        | .  .  ..|.|..|.| .  .   . 
HGLRFPFPEHARFYMYQICCALEYCHSHGIIHRDLKPENILLDEHIKICDFGLARQLTTFCGTPWYMAPEVLGYGKCKCDWWSCGCILYEMLCGYPPFP-

EKSLLQFQSIYSTFLSLSNSEELEFINNILSKLVE--PSKDKSIQ--------IYT
    . |. |         .| ..||...| |  |  |.  .  |         . 
-QMQMMFKKIG-------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF