Gene n1180 (Tetrahymena)

n1180

Species: Tetrahymena
Alias: n1180, 1180, 3812.m02689
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-E4

Sequence

Name Sequence Type Origin Length Description Download
n1180.AA Protein None 794 None Fasta, JSON
n1180.NA RNA None 15353 None Fasta, JSON

Protein domain

Protein domains of n1180.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n1180.AA Ciliate-A5 59-319 23 9.4e-27 89.8 In-house 3-275 (275) Show / Hide 
Range on Protein: 59-319
Range on HMM: 3-275/275
Sequence Identity: 23% (65 aa)

GNVDVYKCIHNKNFRIYLKEMFTKSEEELNQQVEMWVKRQSLLLHPNLIQLHSCCHQKVESFCATFFKIFMLFDSVEADLLNTIKKDRIQK----FSEDE
| .  .|  |.    |. .  .  .|  . . ..   .|.  | |||...| .   .| |.|| .|.|.  ..  .  .|   . . . ..    ..|.|
GCMKIWKNQHQQEYYICKQKQI-QDEDRQKHFQQYFEQRM-QLQHPNIVKLIDFHTHKKEEFCSQFYKVNCYYEYHDNNLEQEMQMRKQCQKDIFYNEQE

LWFLLDSIVGVLEFMQERDLTHQSLRLDTIYINSNHKNIKLFKLADSQ-----LM-GYTTNYENQLTQFDKYI--YLSPLLFTQYGNN----IEHPVHNE
||...|... |. ..|.... |  .|  .| .  . .    .||.|.      .     . |   ..  . .   ||||... |  ..    |  |.||.
LWYIMDCLISVCMYLQQNNICHGDIRPQNICLTQDGQ----VKLMDMNESKDFFYQINWSSYKQYQHHMSTENKQYLSPMQWYQMMHRDEQNIQRPEHNW

YKSDVFTLGMLLVHLSLFESC-ADVYSLIDHS-INQQV-LNDKLSRISN-TYSSDYSQIIQEMCILDEKYRPDFRSLDRKL
||||||.|||..  . . ..|  ..|   . . ..| . | ..|       ||     .| .| ...| .||||  .   |
YKSDVFCLGMICLEMCTMRDCTQFYYD--YETFQIQNNQLIKQLIQMKEKKYSEQFINFIKQMLQFEENKRPDFHQIYQYL
Kinase n1180.AA Ciliate-E4 74-197 24 8.3e-16 49.46 In-house 27-150 (150) Show / Hide 
Range on Protein: 74-197
Range on HMM: 27-150/150
Sequence Identity: 24% (31 aa)

IYLKEMFTKSEEELNQQVEMWVKRQSLLLHPNLIQLHSCCHQKVESFCATFFKIFMLFDSVEADLLNTIK--KDRIQKFSEDELWFLLDSIVGVLEFMQE
| .|     .|... ||     .||  | |.|.|..    |.|.. || .. .. .... .  ||   ||  | . |.|.|.|.| .. . .  . . | 
IVMKIRKFQNETKARQQQQQFRRRQD-LNHENIIMVYEYFHKKEDQFCSSIYRLYWFMEYLQKDLQQHIKQHKQQGQHFDESEIWQIAFCCINAMYYLQQ

RDLTHQSLRLDTIYINSNHKNIKLFK
  .||. |.   | . ..   .|.  
VNITHGDLKPSNIFF-DQYFMVKIAD
Kinase n1180.AA S_TKc 63-326 14 6e-07 -74.98 SMART 15-231 (231) Show / Hide 
Range on Protein: 63-326
Range on HMM: 15-231/231
Sequence Identity: 14% (42 aa)

VYKCIHNK-NFRIYLKEMFTKSEEELNQQVEMWVKRQSLLLHPNLIQLHSCCHQKVESFCATFFKIFMLFDSVEA---DLLNTIKKDRIQK----FSEDE
||||.|.| . .  .|..         ....  ..  .   |||...|. ...           ...| .. ..    ||.  ||| . ..    |.| .
VYKCRHKKTGRIVAIKIIK--------EHIRREIQILKK-HHPNIVKLYDVFQD---------DHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFPFPE-H

LWFLLDSIVGVLEFMQERDLTHQSLRLDTIYINSNHKNIKLFKLADSQLMGYTTNYENQLTQFDKYI----YLSPLLFTQYGNNIEHPVHNEY-KSDVFT
 .|..  |.  ||.. ..   |  |  . | ...   .||.     . ..             . ..    |..| ..           .  . |.|.  
ARFYMYQICCALEYCHSHGIIHRDLKPENILLDE---HIKICDFGLARQL-------------TTFCGTPWYMAPEVL-----------GYGKCKCDWWS

LG----MLLVHLSLFESCADVYSLIDHSINQQVLNDKLSRISNTYSSDYSQIIQEMCILDEKYRPDFRSLDR--KLSSCPKLF
.|     .|.   .|.   ... ....                  |..  ..|. ..  | . ||    . .   .  |   |
CGCILYEMLCGYPPFP---QMQMMFKKIG----------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF
Kinase n1180.AA TBCK 166-197 25 2e-05 15.25 In-house 93-127 (346) Show / Hide 
Range on Protein: 166-197
Range on HMM: 93-127/346
Sequence Identity: 25% (9 aa)

LEFMQERDLTHQSLRLDTIYINSNHK---NIKLFK
| .|  ....| .| .. ||...| .    .||..
LSYMHKHHIVHRFLHPHNIYLDDNGNQKLHVKLAN
Kinase n1180.AA CDK 101-138 33 0.000675 8.17 In-house 65-104 (284) Show / Hide 
Range on Protein: 101-138
Range on HMM: 65-104/284
Sequence Identity: 33% (14 aa)

LLHPNLIQLHSCCHQK--VESFCATFF--KIFMLFDSVEADL
| ||| ..|| .||.|    .. ....  |..| |. .. ||
L-HPNIVKLHDVCHTKNMDRNN-KDKHENKLYMVFEYMDHDL
Kinase n1180.AA TBCK 243-259 41 0.190615 0.8 In-house 183-199 (346) Show / Hide 
Range on Protein: 243-259
Range on HMM: 183-199/346
Sequence Identity: 41% (7 aa)

YKSDVFTLGMLLVHLSL
.||||  ||. .... |
PKSDVWSLGCIMLEICL
MORN n1180.AA MORN 631-652 54 1.4e-08 35.8 SMART 1-22 (22) Show / Hide 
Range on Protein: 631-652
Range on HMM: 1-22/22
Sequence Identity: 54% (12 aa)

QKYEGEWQNNKRHGKGTQYFQN
 .|||||.|.||||.|. .. |
DRYEGEWHNGKRHGHGVYWWAN
MORN n1180.AA MORN 633-655 47 1.6e-08 35.7 Pfam 1-23 (23) Show / Hide 
Range on Protein: 633-655
Range on HMM: 1-23/23
Sequence Identity: 47% (11 aa)

YEGEWQNNKRHGKGTQYFQNGSI
|||||.|.|.||.|. .. .|. 
YEGEWKNGKMHGHGVYTWPDGDR
MORN n1180.AA MORN 610-632 39 1e-06 29.0 Pfam 1-23 (23) Show / Hide 
Range on Protein: 610-632
Range on HMM: 1-23/23
Sequence Identity: 39% (9 aa)

YEGDVLDGKKHGYGVFIFSNQQK
|||.  .||.||.||.....  .
YEGEWKNGKMHGHGVYTWPDGDR
MORN n1180.AA MORN 608-629 45 4e-06 27.45 SMART 1-22 (22) Show / Hide 
Range on Protein: 608-629
Range on HMM: 1-22/22
Sequence Identity: 45% (10 aa)

NIYEGDVLDGKKHGYGVFIFSN
..|||.  .||.||.||....|
DRYEGEWHNGKRHGHGVYWWAN
MORN n1180.AA MORN 657-676 40 8.3e-05 22.22 Pfam 1-20 (23) Show / Hide 
Range on Protein: 657-676
Range on HMM: 1-20/23
Sequence Identity: 40% (8 aa)

YEGQWEDDQYHGFGTLFYKD
|||.| ... ||.|.. ..|
YEGEWKNGKMHGHGVYTWPD
MORN n1180.AA MORN 655-676 31 0.000274 21.03 SMART 1-22 (22) Show / Hide 
Range on Protein: 655-676
Range on HMM: 1-22/22
Sequence Identity: 31% (7 aa)

IKYEGQWEDDQYHGFGTLFYKD
 .|||.| ... ||.|.. ...
DRYEGEWHNGKRHGHGVYWWAN
MORN n1180.AA MORN 734-756 43 5e-06 26.6 Pfam 1-23 (23) Show / Hide 
Range on Protein: 734-756
Range on HMM: 1-23/23
Sequence Identity: 43% (10 aa)

YEGDFKYGKKDGFGTITFSNNDY
|||..| ||..|.|. |... |.
YEGEWKNGKMHGHGVYTWPDGDR
MORN n1180.AA MORN 732-753 36 0.000455 19.38 SMART 1-22 (22) Show / Hide 
Range on Protein: 732-753
Range on HMM: 1-22/22
Sequence Identity: 36% (8 aa)

VKYEGDFKYGKKDGFGTITFSN
 .|||... ||..|.|. ...|
DRYEGEWHNGKRHGHGVYWWAN
MORN n1180.AA MORN 755-776 27 0.024091 6.48 SMART 1-22 (22) Show / Hide 
Range on Protein: 755-776
Range on HMM: 1-22/22
Sequence Identity: 27% (6 aa)

DYFVGQFINNQANGNGNYMYED
|   |.. |..  |.| |.. .
DRYEGEWHNGKRHGHGVYWWAN
MORN n1180.AA MORN 757-776 30 0.172354 10.17 Pfam 1-20 (23) Show / Hide 
Range on Protein: 757-776
Range on HMM: 1-20/23
Sequence Identity: 30% (6 aa)

FVGQFINNQANGNGNYMYED
. |.. |.. .|.| | . |
YEGEWKNGKMHGHGVYTWPD