Gene CC1G_04403 (C.cinerea)

CC1G_04403

Species: C.cinerea
Alias: CC1G_04403
External Links:
Annotation:

Classification

Group: PKL
Family: CAK
Subfamily: ChoK

Sequence

Name Sequence Type Origin Length Description Download
CC1G_04403.AA Protein None 451 None Fasta, JSON
CC1G_04403.NA RNA None 1356 None Fasta, JSON
CC1G_04403.kin_dom Protein Kinase Domain None 223 None Fasta, JSON

Protein domain

Protein domains of CC1G_04403.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Choline_kinase CC1G_04403.AA Choline_kinase 253-357 33 3.4e-32 118.06 Pfam 126-225 (225) Show / Hide 
Range on Protein: 253-357
Range on HMM: 126-225/225
Sequence Identity: 33% (36 aa)

QELDLARFEKEWSIYVQWAAKVQDKHSGSKVVFAHNDTQYGNLLKLEDSNEVADEHRQLIVVDFEYAGPNPAAYDIANHFHEWTANYHGDTP--HLLNRA
.. .. ..||| . . .| .  . ...| ..||.|||.||||.. .      ..|...|. .|.|||..|..|.|||||| ||...|| ..|  | .. .
KCINWYWLEKEINWLEKWLE--NFHSPGLWIVFCHNDLQYGNIMYI-----EDNETNCLMFIDWEYASYNYRAFDIANHFCEWMYDYHWPEPPFHKCDYS

RYPTFAE
.||.  .
KYPNREQ
Choline_kinase CC1G_04403.AA Choline_kinase 126-216 36 1.3e-21 82.48 Pfam 1-96 (225) Show / Hide 
Range on Protein: 126-216
Range on HMM: 1-96/225
Sequence Identity: 36% (35 aa)

RVPTLLLRIYGSSSGSLISRPRELHILHKLSSVYRIGPLLYGTFENGRIE--QYF-KSTTLTESDIREPTVSRWIGARMAEFHSVDI---EVVSPPS
  . .|.|||| .  ..| | .|. ..  ||  . .|| |||.|.|||.|  ..   |.||.  |||.|  |. |..||.|||..|.   . .....
HPRKYLVRIYGQGTEHFIDRETEIVNFECLSE-HGLGPKLYGFFPNGRVEVTEFIEHSRTLSCEDIRDPEISKKIAKRMREFHDIDMCHPHPWKKMP
APH CC1G_04403.AA APH 104-361 14 4.7e-11 38.58 Pfam 1-248 (248) Show / Hide 
Range on Protein: 104-361
Range on HMM: 1-248/248
Sequence Identity: 14% (40 aa)

NIRKISGALTNAVFFVSHKTNKRVPTLLLRIYGSSSGSLISRPRELHILHKLSSV-Y--RIGPLLYGTFENGRIEQ-YFKSTTLTESDIREPTVS-----
 .| |||  .|..... .      |...||.| ..  .. ...||...|. |.       .  .|.|   .. ..  .   . |.  | ...        
WWRPISGGWSNRTYYRTTDD-R--PRYVLRRYPPP-WWAEELHREHRWLRHLAAHGIPVPVPRVLWGCTDDEFHGWPWYLMEWLPGEDLWRW--HALHCA

------RWIGARMAEFHSVDIEVVSPPSDATPTGWELSVKKCVSSWMPAAHKVLSL--PGVSHAVRQELDLARFEKEWSIYVQWAAKVQDKHSGSKVVFA
      ..... .|..|.||.. . .. .  .. ...               ...   ..|  ....|  .......     .| .. ..       .. 
QRPALLEALARFLARLHQVDPPDCPFAWWGRWRLYHW-------------RQLMDWCRCWVDPEWFDEDRQWWLWQR---LWAWLEAHWP-----PPCWC

HNDTQYGNLLKLEDSNEVADEHRQLI--VVDFEYAGPNPAAYDIANHF-HEWTANYHGDTPHLLNRARY---PTFAERRNF
|.|   ||..         ..  . .  |.|...|.. ...||.| .. |.|.....      . ||     |.... | .
HGDFHPGNVMWDP------RPDGGRVTGVIDWDDACWGDPHYDLAMCWWHWWCRWFWPEWRDAYGRAYCRHDPDWHRMRWW