ABC1-B_b

Species: S.moellendorffii
Alias: ABC1-B_b
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-B

Sequence

Name Sequence Type Origin Length Description Download
ABC1-B_b.AA Protein None 576 None Fasta, JSON
ABC1-B_b.NA RNA None 1731 None Fasta, JSON

Protein domain

Protein domains of ABC1-B_b.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase ABC1-B_b.AA ABC1-B 172-293 43 6.8e-45 155.46 In-house 1-125 (125) Show / Hide
Range on Protein: 172-293
Range on HMM: 1-125/125
Sequence Identity: 43% (56 aa)

SELGRLPHEVFVEFDPEPFASASLAQVHVAKTHDGKKVAVKVQHMHLTDSAAADTATVGFVVNLVYWLFP------SFDYRWLLDEVKESLPKELDFNNE
. ||  . .|| |||..| |.||||||| || |||  |||||||  | ..   |  . ...| .. |.||      .|   |..|| ...||.||||.||
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNE

IENARMCMDNFKKLSPRIVPFISVPEVH
 .||  |   |||.  .  .|. || .|
ARNAEKCRQMFKKF--KHFDFLYVPRIH

Kinase ABC1-B_b.AA ABC1 172-293 38 2.2e-44 151.49 Pfam 1-126 (126) Show / Hide
Range on Protein: 172-293
Range on HMM: 1-126/126
Sequence Identity: 38% (49 aa)

SELGRLPHEVFVEFDPEPFASASLAQVHVAKTHD-GKKVAVKVQHMHLTDSAAADTATVGFVVNLVYWLFPS-----FDYRWLLDEVKESLPKELDFNNE
.|||. ..|.| |||.||.|.||.|||| |...| |..||||||| .. ..  .|. .. .....|  .||      ||..|..|| ...||.|||. .|
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

IENARMCMDNFKKLSPRIVPFISVPEVH
 .|.  . .||...   . |.. ||.|.
AKNMERFRENFRHW--HRQPWVYVPKVY

Kinase ABC1-B_b.AA ABC1 172-293 44 3e-41 143.34 In-house 1-123 (123) Show / Hide
Range on Protein: 172-293
Range on HMM: 1-123/123
Sequence Identity: 44% (56 aa)

SELGRLPHEVFVEFDPEPFASASLAQVHVAKTHDGKKVAVKVQHMHLTDSAAADTATVGFVVNLVYWLFP-----SFDYRWLLDEVKESLPKELDFNNEI
..||  . .|| |||..|||.||.|||| || .|| .|||||||  . ..   |  .  .||... |.||     .|   |..|| ...||.|.||||| 
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEA

ENARMCMDNFKKLSPRIVPFISVPEVH
.||. | ..|||.    .||. ||..|
RNAEKCRQLFKKF---HWPFFYVPRIH

Kinase ABC1-B_b.AA ABC1-A 185-214 56 7e-10 30.62 In-house 1-30 (216) Show / Hide
Range on Protein: 185-214
Range on HMM: 1-30/216
Sequence Identity: 56% (17 aa)

FDPEPFASASLAQVHVAKTHDGKKVAVKVQ
|   ||| ||  ||| |   ||..||||.|
FEEMPFACASIGQVHQAVLKDGREVAVKIQ

Kinase ABC1-B_b.AA ABC1-A 285-317 39 0.000443 10.32 In-house 96-128 (216) Show / Hide
Range on Protein: 285-317
Range on HMM: 96-128/216
Sequence Identity: 39% (13 aa)

PFISVPEVHLELSTSKLLTMEFIDGIKVTSVEG
||  ||.|  |..|.. |||| . |  .   .|
PFFYVPHVIDEYCTDRVLTMELMYGFPIDQCQG