ABC1-B-p1_d

Species: S.moellendorffii
Alias: ABC1-B-p1_d
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-B-plant1

Sequence

Name Sequence Type Origin Length Description Download
ABC1-B-p1_d.AA Protein None 492 None Fasta, JSON
ABC1-B-p1_d.NA RNA None 1479 None Fasta, JSON

Protein domain

Protein domains of ABC1-B-p1_d.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-B-p1_d.AA ABC1 130-156 51 2.4e-09 33.73 Pfam 1-27 (126) Show / Hide
Range on Protein: 130-156
Range on HMM: 1-27/126
Sequence Identity: 51% (14 aa)

AELGNPINALFERFDQKPLGCASIAQV
.||| |.  .|. ||..|...||||||
EELGCPWEEIFQEFDEEPIAAASIAQV

Kinase ABC1-B-p1_d.AA ABC1 130-156 48 2.6e-09 33.45 In-house 1-26 (123) Show / Hide
Range on Protein: 130-156
Range on HMM: 1-26/123
Sequence Identity: 48% (13 aa)

AELGNPINALFERFDQKPLGCASIAQV
 .|| ..   |. ||.||...||||||
QDLG-NWEDVFSEFDEKPFAAASIAQV

Kinase ABC1-B-p1_d.AA ABC1-B 130-156 51 8.5e-09 28.97 In-house 1-26 (125) Show / Hide
Range on Protein: 130-156
Range on HMM: 1-26/125
Sequence Identity: 51% (14 aa)

AELGNPINALFERFDQKPLGCASIAQV
  || .|   |. |||||.. ||.|||
KDLG-NIEDVFSEFDQKPIAAASLAQV

Kinase ABC1-B-p1_d.AA ABC1-A 143-156 57 0.024231 4.24 In-house 1-14 (216) Show / Hide
Range on Protein: 143-156
Range on HMM: 1-14/216
Sequence Identity: 57% (8 aa)

FDQKPLGCASIAQV
|  .|  |||| ||
FEEMPFACASIGQV

ABC1 ABC1-B-p1_d.AA ABC1 171-267 40 2.2e-22 77.56 Pfam 26-126 (126) Show / Hide
Range on Protein: 171-267
Range on HMM: 26-126/126
Sequence Identity: 40% (41 aa)

QVHRARLKGRSTDVAVKVQHPGAEELMMTDISNQKTFGAFLQRFDVK-----FDLVSAVDELEQQVHHEFDFLREAKSMDRIAVTLSKENRGSPPIQVPR
||||||||    .||||||||| ...|| || | . .   ..||        |||.  |||.....  | |..||||.|.|..  . .    .| . ||.
QVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRREAKNMERFRENFRHW-HRQPWVYVPK

PV
 .
VY

Kinase ABC1-B-p1_d.AA ABC1 171-267 37 1.7e-13 49.51 In-house 25-123 (123) Show / Hide
Range on Protein: 171-267
Range on HMM: 25-123/123
Sequence Identity: 37% (38 aa)

QVHRARLKGRSTDVAVKVQHPGAEELMMTDISNQKTF----GAFLQRFDVK-FDLVSAVDELEQQVHHEFDFLREAKSMDRIAVTLSKENRGSPPIQVPR
|||||.||.  . |||||||||  |   .|| | ...    ..| .  |.| | |   |||...  . | ||..||. ... .. ..|   . | . |||
QVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEARNAEKCRQLFKKF--HWPFFYVPR

PV
..
IH

Kinase ABC1-B-p1_d.AA ABC1-B 171-267 27 1.4e-09 31.77 In-house 25-125 (125) Show / Hide
Range on Protein: 171-267
Range on HMM: 25-125/125
Sequence Identity: 27% (29 aa)

QVHRARLKGRSTDVAVKVQHPGAEELMMTDISNQKTFGAFLQRFDVKFD---------LVSAVDELEQQVHHEFDFLREAKSMDRIAVTLSKENRGSPPI
||||| |..  . ||||||||   .   .|.   .. . |..  |. |          .   .||...    | ||. ||.  .. .  ..|  .. . .
QVHRAKLHD-GETVAVKVQHPWLRKQFHYDM---MMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNEARNAEKCRQMFKKF-KHFDFL

QVPRPV
 |||  
YVPRIH

Kinase ABC1-B-p1_d.AA ABC1-A 171-192 59 0.000106 12.49 In-house 13-33 (216) Show / Hide
Range on Protein: 171-192
Range on HMM: 13-33/216
Sequence Identity: 59% (13 aa)

QVHRARLKGRSTDVAVKVQHPG
|||.|.||.  . ||||.| ||
QVHQAVLKD-GREVAVKIQYPG

Kinase ABC1-B-p1_d.AA ABC1-C 184-192 88 0.011914 3.55 In-house 1-9 (307) Show / Hide
Range on Protein: 184-192
Range on HMM: 1-9/307
Sequence Identity: 88% (8 aa)

VAVKVQHPG
||||| |||
VAVKVLHPG

Kinase ABC1-B-p1_d.AA ABC1-C 261-286 42 0.123053 0.32 In-house 76-101 (307) Show / Hide
Range on Protein: 261-286
Range on HMM: 76-101/307
Sequence Identity: 42% (11 aa)

IQVPRPVPGFVTRKVLVMDFVEGIPI
.. | |.  |||| |||  . | .|.
VKFPTPLRPFVTREVLVETYEESVPV

Kinase ABC1-B-p1_d.AA ABC1-C 322-342 61 0.000373 8.34 In-house 127-147 (307) Show / Hide
Range on Protein: 322-342
Range on HMM: 127-147/307
Sequence Identity: 61% (13 aa)

QMILRDGFFQADPHPGNILVK
.||  | |  || |||||||.
KMIFVDNFVHADLHPGNILVQ