ABC1-B-p1_b-1

Species: S.moellendorffii
Alias: ABC1-B-p1_b-1
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-B-plant1

Sequence

Name Sequence Type Origin Length Description Download
ABC1-B-p1_b-1.AA Protein None 1025 None Fasta, JSON
ABC1-B-p1_b-1.NA RNA None 3075 None Fasta, JSON

Protein domain

Protein domains of ABC1-B-p1_b-1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-B-p1_b-1.AA ABC1 202-250 62 1.3e-27 95.16 Pfam 1-50 (126) Show / Hide
Range on Protein: 202-250
Range on HMM: 1-50/126
Sequence Identity: 62% (31 aa)

KQLGKPLDELFSEFDRKPLATASIAQVHRARMKD-GRDVVVKVQHQGIKE
..||.|..|.|.|||..|.|.|||||||||| || |..|.||||| |.|.
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKK

Kinase ABC1-B-p1_b-1.AA ABC1 202-250 61 3.1e-25 90.18 In-house 1-48 (123) Show / Hide
Range on Protein: 202-250
Range on HMM: 1-48/123
Sequence Identity: 61% (30 aa)

KQLGKPLDELFSEFDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKE
. || . .. ||||| ||.|.|||||||||..|||. |.||||| |..|
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVRE

Kinase ABC1-B-p1_b-1.AA ABC1-B 202-250 55 7.7e-23 80.02 In-house 1-48 (125) Show / Hide
Range on Protein: 202-250
Range on HMM: 1-48/125
Sequence Identity: 55% (27 aa)

KQLGKPLDELFSEFDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKE
| || . .. ||||| ||.|.||.||||||  .||. | |||||  ...
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRK

Kinase ABC1-B-p1_b-1.AA ABC1-A 215-250 55 7.6e-16 51.47 In-house 1-36 (216) Show / Hide
Range on Protein: 215-250
Range on HMM: 1-36/216
Sequence Identity: 55% (20 aa)

FDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKE
|  .| | ||| |||.|..|||| |.||.|  |..|
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAE

ABC1 ABC1-B-p1_b-1.AA ABC1 266-327 25 3.5e-10 36.52 Pfam 49-118 (126) Show / Hide
Range on Protein: 266-327
Range on HMM: 49-118/126
Sequence Identity: 25% (18 aa)

RDSLVQDLYNARVIVEWVAWAEPD-----YDFGPVLDEWCREVPQELNFNQEAENTKKVAHNLKSW---T
.... .|.|| |....||.  .|.     .|.  ..|| ....|.||.. .||.|......|.. |   .
KKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRREAKNMERFRENFRHWHRQP

Kinase ABC1-B-p1_b-1.AA ABC1-B 266-324 27 7.3e-08 25.57 In-house 47-111 (125) Show / Hide
Range on Protein: 266-324
Range on HMM: 47-111/125
Sequence Identity: 27% (18 aa)

RDSLVQDLYNARVIVEWVAWAEP------DYDFGPVLDEWCREVPQELNFNQEAENTKKVAHNLK
|..   |.   ...|. . |. |      .. | ...||     ||||.|. ||.| .|... .|
RKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNEARNAEKCRQMFK

Kinase ABC1-B-p1_b-1.AA ABC1 272-324 29 7.3e-07 24.02 In-house 53-110 (123) Show / Hide
Range on Protein: 272-324
Range on HMM: 53-110/123
Sequence Identity: 29% (17 aa)

DLYNARVIVEWVAWAEP-----DYDFGPVLDEWCREVPQELNFNQEAENTKKVAHNLK
|. | ...|. . |. |     .. . ...||  .| |.|..|| ||.| .|.....|
DINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEARNAEKCRQLFK

Beta-lactamase ABC1-B-p1_b-1.AA Beta-lactamase 559-1010 16 1.2e-52 183.7 Pfam 1-358 (358) Show / Hide
Range on Protein: 559-1010
Range on HMM: 1-358/358
Sequence Identity: 16% (86 aa)

LHQLLREMHK-QQRILGVQVCAYKDGKVIVDTAA-GYLGKYDPRPVRCDSLFPVFSATKGVTAALLHWLADHGKLSLAEKI-----S--------SIWPE
. .|.|.. . |..|.|..|. |.||||..|... ||  . ..||.. |..|...|.|| .||.... |.. |||.| ...     |          |||
FDRLIRQFMAVQHHIPGMAVAVYHDGKVVYDRWFRGYADRETGRPWTPDTRFRIASVTKTFTATAVMQLVERGKLDLDDPVYTDDLSHNYSPVTEKYWPE

FAENHKDACTVAHALNHTCGL-------QNALYDVLRKNPLAMCDWSEMLKLIAAAKPESPPGQDQKYHALSFGWICGGIAEKAT-G-KTFQQLIEEAFV
|.  .|.. ||.| |.|| ||        .. ||             .|.. .|...|..|||    |.....||. | |.|..| | ... |...| . 
FPG-GKQPMTVRHLLTHTSGLPYYPPDMWWDAYDW-----------EQMVRYLAQWPPWWPPGTRWMYSNTGYGWLLGEIVERVTQGVQPYEQYMRERIF

TPLNVTGEFYVGIPPGVEERLASLT-MDPEELKNIPAASAAALRTHLSTLEVGTTSDGVGPASLEDFLTNGSPLSVSSLPSLFNMLFIRRATIPAANGHF
.||    ..... |.  ..|.|..  ... . .  |.   .                                                   .||.... 
RPL-GMWHTHFNPPEPEDPRYAHGYYGHG-PPRV-PP-WPMGAY------------------------------------------------QPAGGMYS

SARALARFY----------------------ATLASGGRVPPGTSSSKP---PLGSHAHRPPLGGSSSTAKRKKGSRITGKNCCKTRSLSSDLSGGQIHF
.|| .||..                      .  .. ....|.         ..| . . ...|                                    
TARDMARWMQMLADGVALNQGRLLSEWRQQMW-WMH-NYTFPPGMRQGYGWWGYGWMVNDKTGG------------------------------------

QEEQDAPAKIFTSGDIHDAFVGGGKYSGLVTRDSEKFGLGFWKLKTGDTSAGAGKKKMAFGHSG---IGGSFGYCDPDN---------DFAMVITVNKMT
                                                        . ..||.|    .|.. . |||.         . ..|. .|.| 
--------------------------------------------------------PGWWGHTGATGGYGTYMWFDPDRAVVWPPNRANIGVVVLTNRMH

---LGQVSGDIVRLVCS
    . .  . ..|.. 
PNPDR-EDWRYIALAAA