Gene ABC1-B-p1_b-2 (S.moellendorffii)
ABC1-B-p1_b-2
Species: S.moellendorffii
Alias: ABC1-B-p1_b-2
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| ABC1-B-p1_b-2.AA | Protein | None | 891 | None | Fasta, JSON |
| ABC1-B-p1_b-2.NA | RNA | None | 2676 | None | Fasta, JSON |
Protein domains of ABC1-B-p1_b-2.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| ABC1 | ABC1-B-p1_b-2.AA | ABC1 | 108-216 | 41 | 1.8e-44 | 151.79 | Pfam | 1-118 (126) | Show / Hide |
Range on Protein: 108-216 Range on HMM: 1-118/126 Sequence Identity: 41% (49 aa) KQLGKPLDELFSEFDRKPLATASIAQVHRARMKD-GRDVVVKVQHQGIKECVLQDLYNARVIVEWVAWAEPD-----YDFGPVLDEWCREVPQELNFNQE ..||.|..|.|.|||..|.|.|||||||||| || |..|.||||| |.|. . .|.|| |....||. .|. .|. ..|| ....|.||.. .| EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE AENTKKVAHNLKSW---T |.|......|.. | . AKNMERFRENFRHWHRQP |
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| Kinase | ABC1-B-p1_b-2.AA | ABC1 | 108-213 | 42 | 4.3e-38 | 132.87 | In-house | 1-110 (123) | Show / Hide |
Range on Protein: 108-213 Range on HMM: 1-110/123 Sequence Identity: 42% (47 aa) KQLGKPLDELFSEFDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKECVLQDLYNARVIVEWVAWAEP-----DYDFGPVLDEWCREVPQELNFNQEA . || . .. ||||| ||.|.|||||||||..|||. |.||||| |..| . |. | ...|. . |. | .. . ...|| .| |.|..|| || QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEA ENTKKVAHNLK .| .|.....| RNAEKCRQLFK |
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| Kinase | ABC1-B-p1_b-2.AA | ABC1-B | 108-213 | 39 | 1.4e-35 | 124.51 | In-house | 1-111 (125) | Show / Hide |
Range on Protein: 108-213 Range on HMM: 1-111/125 Sequence Identity: 39% (44 aa) KQLGKPLDELFSEFDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKECVLQDLYNARVIVEWVAWAEP------DYDFGPVLDEWCREVPQELNFNQE | || . .. ||||| ||.|.||.|||||| .||. | ||||| ... |. ...|. . |. | .. | ...|| ||||.|. | KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNE AENTKKVAHNLK |.| .|... .| ARNAEKCRQMFK |
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| Kinase | ABC1-B-p1_b-2.AA | ABC1-A | 121-156 | 55 | 7.6e-16 | 51.47 | In-house | 1-36 (216) | Show / Hide |
Range on Protein: 121-156 Range on HMM: 1-36/216 Sequence Identity: 55% (20 aa) FDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKE | .| | ||| |||.|..|||| |.||.| |..| FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAE |
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| Beta-lactamase | ABC1-B-p1_b-2.AA | Beta-lactamase | 475-722 | 26 | 5.7e-44 | 153.52 | Pfam | 1-263 (358) | Show / Hide |
Range on Protein: 475-722 Range on HMM: 1-263/358 Sequence Identity: 26% (74 aa) LHQLLREMHK-QQRILGVQVCAYKDGKVIVDTAA-GYLGKYDPRPVRCDSLFPVFSATKGVTAALLHWLADHGKLSLAEKI-----S--------SIWPE . .|.|.. . |..|.|..|. |.||||..|... || . ..||.. |..|...|.|| .||.... |.. |||.| ... | ||| FDRLIRQFMAVQHHIPGMAVAVYHDGKVVYDRWFRGYADRETGRPWTPDTRFRIASVTKTFTATAVMQLVERGKLDLDDPVYTDDLSHNYSPVTEKYWPE FAENHKDACTVAHALNHTCGL-------QNALYDVLRKNPLAMCDWSEMLKLIAAAKPESPPGQDQKYHALSFGWICGGIAEKAT-G-KTFQQLIEEAFV |. .|.. ||.| |.|| || .. || .|.. .|...|..||| |.....||. | |.|..| | ... |...| . FPG-GKQPMTVRHLLTHTSGLPYYPPDMWWDAYDW-----------EQMVRYLAQWPPWWPPGTRWMYSNTGYGWLLGEIVERVTQGVQPYEQYMRERIF TP-LKVNGEFYVGIPPDFLTNGSPLSVSSLPSLFNMLFIRRATIPAANGHFSARALARFY------ATLASGGRVPPGT .| . .|.. | | . ... | . . |..||.... .|| .||.. |. | ... RPLGMWHTHFNPPEPEDPRYAHGYYGHG-PPRV-PP-WPMGAYQPAGGMYSTARDMARWMQMLADGVALNQGRLLSEW- |
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| Beta-lactamase | ABC1-B-p1_b-2.AA | Beta-lactamase | 812-876 | 15 | 3.6e-05 | 18.66 | Pfam | 283-358 (358) | Show / Hide |
Range on Protein: 812-876 Range on HMM: 283-358/358 Sequence Identity: 15% (13 aa) F---GLGFWKLKTGDTSAGAGKKMAFGHSG---IGGSFGYCDPDN---------DFAVAITVNKMT---LGQVSGDIVRLVCS . |.|.. ... . ..||.| .|.. . |||. . .|.. .|.| . . . ..|.. YGWWGYGWMVNDKTGG------PGWWGHTGATGGYGTYMWFDPDRAVVWPPNRANIGVVVLTNRMHPNPDR-EDWRYIALAAA |
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