Gene ABC1-D_a (S.moellendorffii)

ABC1-D_a

Species: S.moellendorffii
Alias: ABC1-D_a
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-D

Sequence

Name Sequence Type Origin Length Description Download
ABC1-D_a.AA Protein None 536 None Fasta, JSON
ABC1-D_a.NA RNA None 1611 None Fasta, JSON

Protein domain

Protein domains of ABC1-D_a.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-D_a.AA ABC1 133-253 40 2e-55 188.65 Pfam 1-126 (126) Show / Hide 
Range on Protein: 133-253
Range on HMM: 1-126/126
Sequence Identity: 40% (51 aa)

NELDTPMQVLFSEFERQPLAAASLGQVHRAVLRN-GEQVVVKIQRPGLKELFDIDLSNLKFIAEYFQKDEMLGGPLR-DWVGIYDECATVLYREIDYINE
.|| .|.  .|.||...|.||||..|||||.|.. ||.|.||.|.||.|.... |. |....|..... .  .  .| |...|.||..  |..|.|| .|
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

GRNADKFRRDFRNI---KWVKVPKVY
..|...||..||..   .||.|||||
AKNMERFRENFRHWHRQPWVYVPKVY
Kinase ABC1-D_a.AA ABC1 133-193 42 3.3e-23 83.42 In-house 1-60 (123) Show / Hide 
Range on Protein: 133-193
Range on HMM: 1-60/123
Sequence Identity: 42% (26 aa)

NELDTPMQVLFSEFERQPLAAASLGQVHRAVLRNGEQVVVKIQRPGLKELFDIDLSNLKFI
 .|  .    ||||. .|.||||..|||||.|. |. |.||.| ||..| .. |. |....
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMV
Kinase ABC1-D_a.AA ABC1-A 146-190 57 5.4e-19 62.49 In-house 1-45 (216) Show / Hide 
Range on Protein: 146-190
Range on HMM: 1-45/216
Sequence Identity: 57% (26 aa)

FERQPLAAASLGQVHRAVLRNGEQVVVKIQRPGLKELFDIDLSNL
||  | |.|| ||||.|||. |  |.|||| || .|  | |. ||
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAESIDSDINNL
Kinase ABC1-D_a.AA ABC1-B 133-193 44 3.4e-18 63.13 In-house 1-60 (125) Show / Hide 
Range on Protein: 133-193
Range on HMM: 1-60/125
Sequence Identity: 44% (27 aa)

NELDTPMQVLFSEFERQPLAAASLGQVHRAVLRNGEQVVVKIQRPGLKELFDIDLSNLKFI
  |  .    ||||. .|.||||| |||||.|  || | ||.| | |.. |. |.  ....
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELF
Kinase ABC1-D_a.AA ABC1-B 215-253 35 7.4e-11 36.47 In-house 84-125 (125) Show / Hide 
Range on Protein: 215-253
Range on HMM: 84-125/125
Sequence Identity: 35% (15 aa)

DECATVLYREIDYINEGRNADKFRRDFR---NIKWVKVPKVY
||   .|. |.|  ||.|||.| |. |.   . . ..||...
DEIQKNLPQELDFYNEARNAEKCRQMFKKFKHFDFLYVPRIH
Kinase ABC1-D_a.AA ABC1 215-253 36 2.1e-10 37.62 In-house 83-123 (123) Show / Hide 
Range on Protein: 215-253
Range on HMM: 83-123/123
Sequence Identity: 36% (15 aa)

DECATVLYREIDYINEGRNADKFRRDFR--NIKWVKVPKVY
||  ..|. |.|. ||.|||.|.|. |.  . . ..||...
DEFQKELPWECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-D_a.AA ABC1-C 213-317 30 8.2e-05 10.43 In-house 42-146 (307) Show / Hide 
Range on Protein: 213-317
Range on HMM: 42-146/307
Sequence Identity: 30% (32 aa)

IYDECATVLYREIDYINEGRNADKFRRDFRNIKWVKVPKVYWDFTSRKVITLEYLPGIKINDLAALDAGSYKRSLIASRAIEAYLIQILKTGFFHADPHP
| .|   ..   ||   |  | . |   |||.| || |     |  | |.   |   . .            .  ||   |   |  |    | ||| ||
IVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYEESVPVSSYQQAGIPVDLKRKIARLGINMLLKMIFVDNFVHADLHP

GNLAV
||. |
GNILV
Kinase ABC1-D_a.AA ABC1-C 418-447 40 0.014274 3.3 In-house 278-307 (307) Show / Hide 
Range on Protein: 418-447
Range on HMM: 278-307/307
Sequence Identity: 40% (12 aa)

STFTFVLRAFSTLEGIGYILDPKFSFAKIA
| |  .  |   |||.|  ||||      |
SNFASIVFAIMVLEGLGRSLDPKLDILEAA