Gene ABC1-E_b (S.moellendorffii)

ABC1-E_b

Species: S.moellendorffii
Alias: ABC1-E_b
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-E

Sequence

Name Sequence Type Origin Length Description Download
ABC1-E_b.AA Protein None 614 None Fasta, JSON
ABC1-E_b.NA RNA None 1845 None Fasta, JSON

Protein domain

Protein domains of ABC1-E_b.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase ABC1-E_b.AA ABC1 206-316 37 1.2e-35 122.19 Pfam 9-126 (126) Show / Hide 
Range on Protein: 206-316
Range on HMM: 9-126/126
Sequence Identity: 37% (44 aa)

DVFYDISSEPIAAGSLGQVYKARLKSNGDVVAVKVQRPGVLQVIACDLFILRLVAGTLQRMLKS----HTDFVDLLDTWALRFFDELDYFKEANNAQRFI
..|. .. |||||.|..||..||||..|  ||||||.||| . .  |. ..|..| ...|  .       |.. ..|. . . . ||||  ||.|. || 
EIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRREAKNMERFR

KSMSPV---PMVVIPKVY
. .      |.| .||||
ENFRHWHRQPWVYVPKVY
Kinase ABC1-E_b.AA ABC1 201-259 44 3.3e-14 52.27 In-house 1-60 (123) Show / Hide 
Range on Protein: 201-259
Range on HMM: 1-60/123
Sequence Identity: 44% (27 aa)

KNIGN--DVFYDISSEPIAAGSLGQVYKARLKSNGDVVAVKVQRPGVLQVIACDLFILRLV
. .||  |||   . .|.|| |..|| .|.||. |  |||||| ||| . |  |.. ...|
QDLGNWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMV
Kinase ABC1-E_b.AA ABC1-B 201-316 30 4e-14 48.33 In-house 1-125 (125) Show / Hide 
Range on Protein: 201-316
Range on HMM: 1-125/125
Sequence Identity: 30% (38 aa)

KNIGN--DVFYDISSEPIAAGSLGQVYKARLKSNGDVVAVKVQRPGVLQVIACDLFILRLVAGTLQRML-KS----HTDFVDLLDTWALRFFDELDYFKE
| .||  |||   . .|||| || || .| |.  |  |||||| | .   .  |.. ..|.   .  .. ||       | ...|        |||  .|
KDLGNIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNE

ANNAQRFIKSMS---PVPMVVIPKVY
| || .     .     . ...|...
ARNAEKCRQMFKKFKHFDFLYVPRIH
Kinase ABC1-E_b.AA ABC1-A 211-253 46 6.8e-09 27.15 In-house 1-42 (216) Show / Hide 
Range on Protein: 211-253
Range on HMM: 1-42/216
Sequence Identity: 46% (20 aa)

ISSEPIAAGSLGQVYKARLKSNGDVVAVKVQRPGVLQVIACDL
    | |. | ||| .|.||. |  ||||.| ||| . |  |.
FEEMPFACASIGQVHQAVLKD-GREVAVKIQYPGVAESIDSDI
Kinase ABC1-E_b.AA Ciliate-A9 214-240 31 2.6e-08 14.99 In-house 5-33 (392) Show / Hide 
Range on Protein: 214-240
Range on HMM: 5-33/392
Sequence Identity: 31% (9 aa)

EPIAAGSLGQVYKARLKS--NGDVVAVKV
..|  |. |.|...| ..  .. ..||||
KIIGEGAFGCVIQCRDIQQEDKQEYAVKV
Kinase ABC1-E_b.AA Fused 209-240 46 1e-06 18.35 In-house 1-31 (251) Show / Hide 
Range on Protein: 209-240
Range on HMM: 1-31/251
Sequence Identity: 46% (15 aa)

YDISSEPIAAGSLGQVYKARLKSNGDVVAVKV
| .|.  .  || | ||||| | .  |||.|.
YHVSEM-VGQGSFGCVYKARRKYDSKVVAIKF
Kinase ABC1-E_b.AA TKL 216-240 33 4e-06 17.91 In-house 1-33 (364) Show / Hide 
Range on Protein: 216-240
Range on HMM: 1-33/364
Sequence Identity: 33% (11 aa)

IAAGSLGQVYKARLKSNG--------DVVAVKV
|  |. |.|||.... .|         .||||.
IGSGGFGEVYKGKWRGWGGKCPSDTGKDVAVKK
Kinase ABC1-E_b.AA NinaC 209-243 40 1.2e-05 17.78 In-house 1-34 (267) Show / Hide 
Range on Protein: 209-243
Range on HMM: 1-34/267
Sequence Identity: 40% (14 aa)

YDISSEPIAAGSLGQVYKARLKSNGDVVAVKVQRP
. |  | |. |  | |.|.  | || ..|||.| .
WEI-YETIGKGTYGKVFKVKNKDNGQIAAVKIQHY
Kinase ABC1-E_b.AA STE20 209-240 41 1.7e-05 16.38 In-house 1-35 (288) Show / Hide 
Range on Protein: 209-240
Range on HMM: 1-35/288
Sequence Identity: 41% (15 aa)

YDISSEPIAAGSLGQVYKARLKSNGDV----VAVKV
|..  | |  || |.||||. |..|..    ||.|.
YEL-LEKIGQGSYGKVYKAYHKPTGEYCNQRVAIKK
Kinase ABC1-E_b.AA MLCK 209-240 34 2e-05 9.73 In-house 1-31 (257) Show / Hide 
Range on Protein: 209-240
Range on HMM: 1-31/257
Sequence Identity: 34% (11 aa)

YDISSEPIAAGSLGQVYKARLKSNGDVVAVKV
|.| .| .. |  |.|.... ||.|. .|.|.
YQIHEE-LGRGKFGIVHRCIEKSTGKTWAAKF
Kinase ABC1-E_b.AA CDK7 209-239 35 8.7e-05 8.2 In-house 1-30 (288) Show / Hide 
Range on Protein: 209-239
Range on HMM: 1-30/288
Sequence Identity: 35% (11 aa)

YDISSEPIAAGSLGQVYKARLKSNGDVVAVK
|.. .  | .|  . ||||. .. | .||.|
YEKIKH-IGEGQFATVYKACDHQTGQIVAIK
Kinase ABC1-E_b.AA S_TKc 210-512 14 0.000108 -108.07 SMART 1-231 (231) Show / Hide 
Range on Protein: 210-512
Range on HMM: 1-231/231
Sequence Identity: 14% (48 aa)

DISSEPIAAGSLGQVYKARLKSNGDVVAVKVQRPGVLQVIACDLFILRLVAGTLQRMLKSHTDFVDLLDTWALRFFDELDYFKEANNAQRFIKSMSPVPM
    ..|  |. |.|||.| |. | .||.|. .                                        ..  |..  |.  .    .|       
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK---------------------------------------EHIRREIQILKK--HHPNIVKLYDVFQD

VVIPKVYMEYTSG--QVLTTKWIDGEKL---SEIREANALSLVNTALTCYLFQLLESGFLHADPHPGNLLRTEDGRLCILDYGLMTEVTEERQLAMIEYL
     . ||| .|    | .   .  .    . . |  | ...   .   |  . . |..| |  | |.| .|  .. | | || ...            
-DHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFPFPE-HARFYMYQICCA-LEYCHSHGIIHRDLKPENILLDE--HIKICDFGLARQL------------

AHVGNSDYVGVAE----DLVKLGFLPDQTDPRMTTTIVPEVTQ----------IFTELLRGGGARKVNMQEISNGIAKISKDYPLVVPSYFSLIIRAFSL
     . ..|  .     ..                     .           |. |.| |      .||.. . |                    | ..
-----TTFCGTPWYMAPEVL-------------------GYGKCKCDWWSCGCILYEMLCGYPPFP-QMQMMFKKIG----------------SPEAKDF

LEGIGLEFDPD--YTITKECY--------PYV
.... |..||.  .|. .           |..
IRKC-LQKDPEKRPTA-EALQDEWDIKCHPWF
Kinase ABC1-E_b.AA ABC1 287-316 25 0.000225 14.45 In-house 92-123 (123) Show / Hide 
Range on Protein: 287-316
Range on HMM: 92-123/123
Sequence Identity: 25% (8 aa)

ELDYFKEANNAQRFIKSMS--PVPMVVIPKVY
|.|. .|| ||...    .   .| ...|...
ECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-E_b.AA CDK7 364-388 56 0.014561 2.16 In-house 124-148 (288) Show / Hide 
Range on Protein: 364-388
Range on HMM: 124-148/288
Sequence Identity: 56% (14 aa)

LHADPHPGNLLRTEDGRLCILDYGL
|| |  | |||  |.|.| | |.||
LHRDLKPNNLLMNENGQLKIADFGL
Kinase ABC1-E_b.AA ABC1-A 289-332 34 0.024878 4.2 In-house 77-120 (216) Show / Hide 
Range on Protein: 289-332
Range on HMM: 77-120/216
Sequence Identity: 34% (15 aa)

DYFKEANNAQRFIKSMSPVPMVVIPKVYMEYTSGQVLTTKWIDG
||  ||  .| |   .   | . .|.|  ||..  |||.  . |
DYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYG