ABC1-F_a

Species: S.moellendorffii
Alias: ABC1-F_a
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-F

Sequence

Name Sequence Type Origin Length Description Download
ABC1-F_a.AA Protein None 412 None Fasta, JSON
ABC1-F_a.NA RNA None 1236 None Fasta, JSON

Protein domain

Protein domains of ABC1-F_a.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-F_a.AA ABC1 131-249 42 3.2e-51 174.5 Pfam 1-126 (126) Show / Hide
Range on Protein: 131-249
Range on HMM: 1-126/126
Sequence Identity: 42% (53 aa)

SELGVPVDVLFSEITPAPVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDIYILRILAGYARIVGRF----NTDLQAVVDEWASSLFREMDYEAE
.||| |.. .|.|. . |.||||..||..|||. .| .||||||.|||| ....|||..|..| ... .       . ||...||| ...|..|.||. |
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

ARNGERFRRLFGDI---PDLTIPKMY
|.| ||||..| ..   |....|| |
AKNMERFRENFRHWHRQPWVYVPKVY

Kinase ABC1-F_a.AA ABC1 131-249 36 9.3e-29 101.87 In-house 1-123 (123) Show / Hide
Range on Protein: 131-249
Range on HMM: 1-123/123
Sequence Identity: 36% (46 aa)

SELGVPVDVLFSEITPAPVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDIYILRILAGYARIVGRFN------TDLQAVVDEWASSLFREMDYE
..|| . .  |||  . |.||||..|| .|.|.  | ||||||| |||.. |. ||  ....  .. ..  |         |  .|||  ..|  | |..
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWF--FPGPDFKWFFLMWFVDEFQKELPWECDFN

AEARNGERFRRLFG--DIPDLTIPKMY
 |||| |..|.||   . |....|. .
NEARNAEKCRQLFKKFHWPFFYVPRIH

Kinase ABC1-F_a.AA ABC1-B 131-249 31 8.4e-24 83.52 In-house 1-125 (125) Show / Hide
Range on Protein: 131-249
Range on HMM: 1-125/125
Sequence Identity: 31% (40 aa)

SELGVPVDVLFSEITPAPVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDIYILRILAGYARIVGRF-------NTDLQAVVDEWASSLFREMDY
. || ...  |||  . |.||||| ||  | |   | ||||||| | ... ...|.  .. .   .  .  |       .  . ...||  ..|  | | 
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWF--FPKSPDFKEFPFMWFHDEIQKNLPQELDF

EAEARNGERFRRLFG---DIPDLTIPKMY
. |||| |. |..|    . . | .|. .
YNEARNAEKCRQMFKKFKHFDFLYVPRIH

Kinase ABC1-F_a.AA ABC1-A 147-186 55 1.3e-10 33.13 In-house 4-42 (216) Show / Hide
Range on Protein: 147-186
Range on HMM: 4-42/216
Sequence Identity: 55% (22 aa)

APVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDI
 | |.|| ||| ||.|. .|  ||||.| |||.  |  ||
MPFACASIGQVHQAVLK-DGREVAVKIQYPGVAESIDSDI

Kinase ABC1-F_a.AA ABC1-A 222-265 40 3.6e-09 28.14 In-house 77-120 (216) Show / Hide
Range on Protein: 222-265
Range on HMM: 77-120/216
Sequence Identity: 40% (18 aa)

DYEAEARNGERFRRLFGDIPDLTIPKMYKELSSQRVLIMEWVEG
||. |||    || |  | |. ..|.  .|... ||| || ..|
DYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYG