Gene CDC2-S1_c (S.moellendorffii)

CDC2-S1_c

Species: S.moellendorffii
Alias: CDC2-S1_c
External Links:
Annotation:

Classification

Group: CMGC
Family: CDK
Subfamily: CDC2-smoe1

Sequence

Name Sequence Type Origin Length Description Download
CDC2-S1_c.AA Protein None 251 None Fasta, JSON
CDC2-S1_c.NA RNA None 756 None Fasta, JSON
CDC2-S1_c.kin_dom Protein Kinase Domain None 62 None Fasta, JSON

Protein domain

Protein domains of CDC2-S1_c.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
S_TKc CDC2-S1_c.AA S_TKc 1-189 14 0.00012 -108.78 SMART 16-231 (231) Show / Hide 
Range on Protein: 1-189
Range on HMM: 16-231/231
Sequence Identity: 14% (37 aa)

MQTRERS-----------------------------------ESSYGFLC-----------NIKSLYLKRDEQ-----VHFSPIKEIMRQLLVGLASLPE
.. |...                                   ..  ..|.           . ...  ||  .      .   .. .|.|.. .|. . .
YKCRHKKTGRIVAIKIIKEHIRREIQILKKHHPNIVKLYDVFQD--DHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFPFPE-HARFYMYQICCALEYCHS

RDLVDQDVQPACIRHSNFLVKLGDFQSARGLSTPPKPEVTGSLGYRALEVISGEAE-KM-VWGAGVVFALMLLGENPFDLSWDKWRAIVQSQDIEDVIKE
.  .  |. |. |  ..  .|..|| .|| |       . |.. |.| ||. |    |  .|  |.... || |. ||.          | | . ..|. 
HGIIHRDLKPENILLDE-HIKICDFGLARQL-----TTFCGTPWYMAPEVL-GYGKCKCDWWSCGCILYEMLCGYPPFP----------QMQMMFKKIG-

GKVNDSSYVHPYTQLAFGFMICLCR---SMRWQCTVRLM-----MQQRVM
            .. |  |.  ...   . |. .   |      ..   .
------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF
Kinase CDC2-S1_c.AA Ciliate-E2-Unclassified 66-126 20 0.000837 9.1 In-house 183-271 (352) Show / Hide 
Range on Protein: 66-126
Range on HMM: 183-271/352
Sequence Identity: 20% (18 aa)

NFLVKLGDFQSARGLSTPPK-----------------PEVTGSLGYR----ALEVISG-EAEKM------VWGAGVVFALMLLGENPFD
|. .|. ||.... . ....                   ..|...|     | ||. | . ...      .|. ||..  || |. ||.
NYYIKIIDFGISKKYQQNNNCDTNQQQKMQIWKQQMMWTFCGTPNYMPQYTAPEVLQGQNYDHSKAYKCDIWSLGVILYEMLFGYYPFY